All modules for which code is available
- cellmil.cli.cell_segmentation
- cellmil.cli.dataset_creation
- cellmil.cli.eval_external
- cellmil.cli.eval_report
- cellmil.cli.feature_extraction
- cellmil.cli.graph_creation
- cellmil.cli.patch_extraction
- cellmil.cli.stats_print
- cellmil.cli.visualize_features
- cellmil.data.cucim_deepzoom
- cellmil.data.patch_extractor
- cellmil.data.storage
- cellmil.datamodels.datasets.cell_gnn_mil_dataset
- cellmil.datamodels.datasets.cell_mil_dataset
- cellmil.datamodels.datasets.celltype_dataset
- cellmil.datamodels.datasets.gnn_mil_dataset
- cellmil.datamodels.datasets.mil_dataset
- cellmil.datamodels.datasets.neoplastic_dataset
- cellmil.datamodels.datasets.patch_gnn_mil_dataset
- cellmil.datamodels.datasets.patch_mil_dataset
- cellmil.datamodels.datasets.utils
- cellmil.datamodels.model
- cellmil.datamodels.transforms.base_label_transform
- cellmil.datamodels.transforms.base_transform
- cellmil.datamodels.transforms.correlation_filter
- cellmil.datamodels.transforms.label_pipeline
- cellmil.datamodels.transforms.normalization
- cellmil.datamodels.transforms.pipeline
- cellmil.datamodels.transforms.time_discretizer
- cellmil.datamodels.wsi
- cellmil.dataset.dataset_creator
- cellmil.features.extractor
- cellmil.features.extractor.embedding
- cellmil.features.extractor.morphological
- cellmil.features.extractor.topological
- cellmil.features.feature_extractor
- cellmil.graph.creator
- cellmil.graph.debug_visualizer
- cellmil.graph.graph_creator
- cellmil.interfaces.AttentionExplainerConfig
- cellmil.interfaces.CellSegmenterConfig
- cellmil.interfaces.DatasetCreatorConfig
- cellmil.interfaces.EvaluationExternalValidatorConfig
- cellmil.interfaces.EvaluationReporterConfig
- cellmil.interfaces.FeatureExtractorConfig
- cellmil.interfaces.FeatureVisualizerConfig
- cellmil.interfaces.GraphCreatorConfig
- cellmil.interfaces.MIL
- cellmil.interfaces.MILPredictorConfig
- cellmil.interfaces.MILTrainerConfig
- cellmil.interfaces.PatchExtractorConfig
- cellmil.interfaces.SHAPExplainerConfig
- cellmil.interfaces.StatsPrinterConfig
- cellmil.interfaces.TableConfig
- cellmil.models.mil.attentiondeepmil
- cellmil.models.mil.cellconv
- cellmil.models.mil.clam
- cellmil.models.mil.graphmil
- cellmil.models.mil.head4type
- cellmil.models.mil.histobistro
- cellmil.models.mil.multifocus
- cellmil.models.mil.standard
- cellmil.models.mil.transmil
- cellmil.models.mil.utils
- cellmil.models.segmentation.cellpose
- cellmil.models.segmentation.cellposeV2
- cellmil.models.segmentation.cellvit
- cellmil.models.segmentation.hovernet
- cellmil.segmentation.cell_segmenter
- cellmil.statistics.stats_printer
- cellmil.utils.dataset_from_dataset
- cellmil.utils.stain_normalization
- cellmil.utils.templates
- cellmil.utils.tools
- cellmil.utils.train.dataset
- cellmil.utils.train.evals.k_fold_cross_validation
- cellmil.utils.train.evals.utils
- cellmil.utils.train.losses
- cellmil.utils.train.metrics
- cellmil.utils.wandb
- cellmil.visualization.feature_visualizer