Python Module Index

c


	c
	`cellmil`
	`cellmil.cli`
	`cellmil.cli.cell_segmentation`
	`cellmil.cli.dataset_creation`
	`cellmil.cli.eval_external`
	`cellmil.cli.eval_report`
	`cellmil.cli.feature_extraction`
	`cellmil.cli.graph_creation`
	`cellmil.cli.patch_extraction`
	`cellmil.cli.stats_print`
	`cellmil.cli.visualize_features`
	`cellmil.config.python`
	`cellmil.config.python.config`
	`cellmil.data`
	`cellmil.data.cucim_deepzoom`
	`cellmil.data.patch_extractor`
	`cellmil.data.storage`
	`cellmil.datamodels`
	`cellmil.datamodels.datasets`
	`cellmil.datamodels.datasets.cell_gnn_mil_dataset`
	`cellmil.datamodels.datasets.cell_mil_dataset`
	`cellmil.datamodels.datasets.celltype_dataset`
	`cellmil.datamodels.datasets.gnn_mil_dataset`
	`cellmil.datamodels.datasets.mil_dataset`
	`cellmil.datamodels.datasets.neoplastic_dataset`
	`cellmil.datamodels.datasets.patch_gnn_mil_dataset`
	`cellmil.datamodels.datasets.patch_mil_dataset`
	`cellmil.datamodels.datasets.utils`
	`cellmil.datamodels.model`
	`cellmil.datamodels.transforms`
	`cellmil.datamodels.transforms.base_label_transform`
	`cellmil.datamodels.transforms.base_transform`
	`cellmil.datamodels.transforms.correlation_filter`
	`cellmil.datamodels.transforms.label_pipeline`
	`cellmil.datamodels.transforms.normalization`
	`cellmil.datamodels.transforms.pipeline`
	`cellmil.datamodels.transforms.time_discretizer`
	`cellmil.datamodels.wsi`
	`cellmil.dataset`
	`cellmil.dataset.dataset_creator`
	`cellmil.features`
	`cellmil.features.extractor`
	`cellmil.features.extractor.embedding`
	`cellmil.features.extractor.morphological`
	`cellmil.features.extractor.topological`
	`cellmil.features.feature_extractor`
	`cellmil.graph`
	`cellmil.graph.creator`
	`cellmil.graph.debug_visualizer`
	`cellmil.graph.graph_creator`
	`cellmil.interfaces`
	`cellmil.interfaces.AttentionExplainerConfig`
	`cellmil.interfaces.EvaluationExternalValidatorConfig`
	`cellmil.interfaces.EvaluationReporterConfig`
	`cellmil.interfaces.MIL`
	`cellmil.interfaces.SHAPExplainerConfig`
	`cellmil.interfaces.StatsPrinterConfig`
	`cellmil.interfaces.TableConfig`
	`cellmil.models`
	`cellmil.models.mil`
	`cellmil.models.mil.attentiondeepmil`
	`cellmil.models.mil.cellconv`
	`cellmil.models.mil.clam`
	`cellmil.models.mil.graphmil`
	`cellmil.models.mil.graphmil.gnn`
	`cellmil.models.mil.graphmil.pool`
	`cellmil.models.mil.head4type`
	`cellmil.models.mil.histobistro`
	`cellmil.models.mil.multifocus`
	`cellmil.models.mil.standard`
	`cellmil.models.mil.transmil`
	`cellmil.models.mil.utils`
	`cellmil.models.segmentation`
	`cellmil.models.segmentation.cellpose`
	`cellmil.models.segmentation.cellposeV2`
	`cellmil.models.segmentation.cellvit`
	`cellmil.models.segmentation.hovernet`
	`cellmil.segmentation`
	`cellmil.segmentation.cell_segmenter`
	`cellmil.statistics`
	`cellmil.statistics.stats_printer`
	`cellmil.utils`
	`cellmil.utils.dataset_from_dataset`
	`cellmil.utils.stain_normalization`
	`cellmil.utils.templates`
	`cellmil.utils.tools`
	`cellmil.utils.train`
	`cellmil.utils.train.callbacks`
	`cellmil.utils.train.dataset`
	`cellmil.utils.train.evals`
	`cellmil.utils.train.evals.k_fold_cross_validation`
	`cellmil.utils.train.evals.utils`
	`cellmil.utils.train.losses`
	`cellmil.utils.train.metrics`
	`cellmil.utils.wandb`
	`cellmil.visualization`
	`cellmil.visualization.feature_visualizer`