Sample Data¶

GlassCut provides built-in access to public whole slide image samples for testing and prototyping. Data is downloaded on demand via pooch and cached locally. This functionality was adapted from the HistoLab implementation.

Sample Functions¶

Function	Source	Description
`aorta_tissue()`	Aperio	Aorta tissue, JPEG 2000
`breast_tissue()`	TCGA-BRCA	Breast carcinoma, H&E
`breast_tissue_diagnostic_green_pen()`	TCGA-BRCA	Breast with green pen marks
`breast_tissue_diagnostic_red_pen()`	TCGA-BRCA	Breast with red pen marks
`breast_tissue_diagnostic_black_pen()`	TCGA-BRCA	Breast with black pen marks
`cmu_small_region()`	CMU	MRXS small region (CC0)
`heart_tissue()`	Aperio	Heart tissue, JPEG 2000
`ihc_breast()`	IDR	Breast cancer, IHC (CD3/CD20)
`ihc_kidney()`	IDR	Kidney tissue, IHC (CD3/CD20)
`ovarian_tissue()`	TCGA-OV	Ovarian carcinoma
`prostate_tissue()`	TCGA-PRAD	Prostate adenocarcinoma

Usage¶

from glasscut.data import breast_tissue, cmu_small_region

slide, path = breast_tissue()
print(f"Loaded: {path}")

slide, path = cmu_small_region()
print(f"Loaded: {path}")